====== Molecular mechanics - it is simple ======

  * **[[Molecules are the balls on the springs|The molecules consist of balls on springs]]**
  * **[[Soft balls|Atoms are soft balls]]**
  * **[[Partial charges|Atoms carry the electric charge]]**

\\
\\



===== What can we simulate in this way? =====

  * Liquids
    * [[Water properties]]
    * Hydrocarbons
    * [[Solvents|Polar solvents]]
    * [[Mixtures]]
  * Biomolecules
    * [[DNA]]
    * Proteins
      * [[Problem of protein folding]]
    * [[Lipids]]
    * Ligands
      * [[DNA interaction with a benzimidazole-containing ligands]]
      * [[Ligands|Selection of linkers for the DNA-bindig ligand]]
  * All together
    * Protein in the lipid bilayer
  * **[[Tips and tricks]]**
 
===== Technology =====
  * Soft
    * [[Abalone]]
    * [[MDynaMix]]
  * Hard
    * [[Processors]]
    * [[Clusters]]
    * [[GPU]]


===== This can be interestingly =====
  * [[This can be interestingly|Articles]]
  * [[This can be interestingly|Sites]]